PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G20080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 353aa    MW: 38193.9 Da    PI: 4.5956
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G20080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.83e-3222121199
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+++FG+++vl+l +++ +e  +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++ae
  OBART01G20080.1  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARAE 115
                      6***********9877****************************************************************************** PP

           DUF260  94 lallke 99 
                      la+l+ 
  OBART01G20080.1 116 LAVLQG 121
                      *99886 PP

2DUF260112.43.1e-35171262191
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
  OBART01G20080.1 171 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 262
                      6***********************9978************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.99321123IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-2822120IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089119.221170272IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-28171262IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERVFG  60
MRKVLELAHK AGPEYLDDIL SSIVYEAEAW GRDPVWGPTG VVGALELEIG TARAELAVLQ  120
GQDQDQPPAV ATLPEPELVV HPPTMAQDES KPSSTTSSSS GTTTTKKNKP RCAACRYLSR  180
SCWPECLLAP YFPAGQPPAQ FGNVHRLFRL NNVLRMMEET RREERDDLMA AIVYEADAWA  240
RDPRYGVAGV VRSLTNELAR VRLDEIAFHL LGTDETYDGY KEEDALAVDP VSGAQAGIGV  300
LGGSGADLQE NTGILLGADE PGPGELAVDP IKDVFDIDRL LAVDDDLSSG TQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638289.10.0PREDICTED: uncharacterized protein LOC107278430
TrEMBLA0A0D3EQC50.0A0A0D3EQC5_9ORYZ; Uncharacterized protein
STRINGORGLA01G0166300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2318866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.42e-21LBD family protein